HGI platform delivers services through 3 core laboratories and 2 bioinformatics teams. Each laboratory has distinct service portfolio and matching instrumentation. Related bioinformatics services are provided by two bioinformatics teams or integrated in the core laboratory services. Following tables summarize available technologies and services.
Services provided by HGI
|
|
FIMM Genomics |
FUGU |
BIDGEN |
|
Illumina SBS short-reads |
|||
|
PacBio long read sequencing |
|||
|
Capillary sequencing / fragment analysis |
|
|
FIMM Genomics |
FUGU |
BIDGEN |
|
Nucleic acid QC |
Labchip GX Touch |
2100 Bioanalyzer Fragment analyzer BluePippin Qubit NanoDrop |
|
|
NGS library |
x |
x | x |
|
Target enrichment / |
x | x | x |
|
Metagenomics sequencing |
x | x | |
|
De Novo |
x | ||
|
Whole Genome Sequencing |
x | x | |
|
Whole Genome Sequencing |
x | x | |
|
Human exome sequencing |
x | x | |
|
Custom targeted sequencing / panels |
x | x | x |
|
Transcriptomics / full length RNA-seq |
x | x | x |
|
NGS Gene expression / |
x | x | |
|
NGS smallRNA / |
x | x | x |
|
NGS targeted RNA panels |
x | ||
|
NGS single-cell RNA-seq |
FIMM SCA Unit | x | x |
|
Tailored amplicon sequencing |
x | x | |
|
T-cell receptor sequencing |
x | ||
|
NGS Mouse speed congenics |
x | ||
|
Cell line identification |
x | x | |
|
Custom NGS assay development |
x | x | x |
|
|
FIMM Genomics |
FUGU |
BIDGEN |
|
Microarray scanners/readers |
Illumina iScan & HiScan Tecan automation |
||
|
SNP genotyping microarrays (GWAS) |
|||
|
Methylation analysis |
|||
|
Targeted SNP genotyping |
|||
|
Gene Expression Microarrays |
|||
|
Protein Biomarker Assays |
|||
|
High-throughput qPCR |
|||
|
Gene expression panels |
NanoString |
|
|
FIMM Genomics |
FUGU |
BIDGEN |
FIMM NGS Bioinfo |
BI-BIOINFO |
|
Resequencing / variant calling analysis |
Included in NGS service |
As a separate service | As a separate service | ||
|
Copy-number alteration discovery analysis |
As a separate service | ||||
|
RNA-seq and miRNA-seq data-analysis |
Included in NGS service |
As a separate service | As a separate service | As a separate service | |
|
Deep amplicon sequencing data analysis |
Included in NGS service |
As a separate service | As a separate service | ||
|
Differential expression data-analysis |
As a separate service | As a separate service | |||
|
Metagenome analysis |
As a separate service | ||||
|
Genome assembly (de novo) |
As a separate service | ||||
|
Genome annotation |
As a separate service | ||||
|
Assorted web servers |
As a separate service |