Skwark, M. J. Croucher, N. J., Puranen, S., Chewapreecha, C., Pesonen, M., Xu, Y. Y.,  Turner, P. Harris, S. R., Beres, S. B., Musser, J. M., Parkhill, J., Bentley, S. D., Aurell, E. and Corander, J. (2017). Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis, PLoS Genetics. 13, 2, 24

Vanhatalo, J., Hosack, G. R., and Sweatman, H. (2017). Spatio-temporal modelling of crown-of-thorns starfish outbreaks on the Great Barrier Reef to inform control strategies. Journal of Applied Ecology, 54:188-197.

Gutmann, M. U. and Corander, J. (2016). Bayesian Optimization for Likelihood-Free Inference of Simulator-Based Statistical Models, Journal of Machine Learning Research, 17(125):1−47.

Lees, J. A., Vehkala, M., Välimäki, N., Harris, S. R., Chewapreecha, C., Croucher, N. J., Marttinen, P., Davies, M. R., Steer, A. C., Tong, S. Y. C.,, Honkela, A. Parkhill, J., Bentley, S. D., and Corander, J. (2016). Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes, Nature Communications, 7:12797

Benner C., Spencer C. C. A., Havulinna A. S., Salomaa V., Ripatti S., Pirinen M. (2016). FINEMAP: Efficient variable selection using summary data from genome-wide association studies. Bioinformatics, 32 (10): 1493-1501

Sankar, A., Malone, B. M., Bayliss, S. C., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. I. & Honkela, A. J. (2016). Bayesian identification of bacterial strains from sequencing data, Microbial Genomics, 2, 8, 9 p.

Rivas M. A., Pirinen M, Conrad D. F., Lek M., et al. (2015). Effect of predicted protein-truncating genetic variants on the human transcriptome. Science 348: 666-669.

Honkela, A., Peltonen, J., Topa, H., Charapitsa, I., Matarese, F., Grote, K., Stunnenberg, H. G., Reid, G., Lawrence, N. D. & Rattray, M. (2015). Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays. Proceedings of the National Academy of Sciences of the United States of America, 112(42): 13115-13120.

Vanhatalo, J., Riihimäki, J., Hartikainen, J., Jylänki, P. Tolvanen, V. and Aki Vehtari (2013). GPstuff: Bayesian Modeling with Gaussian Processes. Journal of Machine Learning Research, 14:1175-1179.

Glaus, P., Honkela, A. & Rattray, M. (2012). Identifying differentially expressed transcripts from RNA-seq data with biological variation. Bioinformatics, 28(13), 1721-1728.


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